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PLoS One ; 15(8): e0237901, 2020.
Artículo en Inglés | MEDLINE | ID: covidwho-723873

RESUMEN

Among the different indicators that quantify the spread of an epidemic such as the on-going COVID-19, stands first the reproduction number which measures how many people can be contaminated by an infected person. In order to permit the monitoring of the evolution of this number, a new estimation procedure is proposed here, assuming a well-accepted model for current incidence data, based on past observations. The novelty of the proposed approach is twofold: 1) the estimation of the reproduction number is achieved by convex optimization within a proximal-based inverse problem formulation, with constraints aimed at promoting piecewise smoothness; 2) the approach is developed in a multivariate setting, allowing for the simultaneous handling of multiple time series attached to different geographical regions, together with a spatial (graph-based) regularization of their evolutions in time. The effectiveness of the approach is first supported by simulations, and two main applications to real COVID-19 data are then discussed. The first one refers to the comparative evolution of the reproduction number for a number of countries, while the second one focuses on French departments and their joint analysis, leading to dynamic maps revealing the temporal co-evolution of their reproduction numbers.


Asunto(s)
Betacoronavirus , Infecciones por Coronavirus/epidemiología , Infecciones por Coronavirus/transmisión , Modelos Estadísticos , Neumonía Viral/epidemiología , Neumonía Viral/transmisión , Análisis Espacio-Temporal , Algoritmos , COVID-19 , Infecciones por Coronavirus/virología , Bases de Datos Factuales , Transmisión de Enfermedad Infecciosa/estadística & datos numéricos , Francia/epidemiología , Humanos , Pandemias , Neumonía Viral/virología , Distribución de Poisson , SARS-CoV-2 , Programas Informáticos
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